Publications

Health and economic impacts of Lassa vaccination campaigns in West Africa

Smith DRM. et al, (2024), Nature Medicine

Ecology and environment predict spatially stratified risk of highly pathogenic avian influenza in wild birds across Europe

Hayes S. et al, (2024)

Rapid spread of African Swine Fever across Borneo

Daniel OZ. et al, (2024)

Inferring community transmission of SARS-CoV-2 in the United Kingdom using the ONS COVID-19 Infection Survey

McCabe R. et al, (2024), Infectious Disease Modelling, 9, 299 - 313

CamTrapAsia: A dataset of tropical forest vertebrate communities from 239 camera trapping studies

Mendes CP. et al, (2024), Ecology

Determining Herd Immunity Thresholds for Hepatitis A Virus Transmission to Inform Vaccination Strategies Among People Who Inject Drugs in 16 US States.

Yang J. et al, (2024), Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 78, 976 - 982

Sex differences in post-acute neurological sequelae of SARS-CoV-2 and symptom resolution in adults after coronavirus disease 2019 hospitalization: an international multi-centre prospective observational study

Cho S-M. et al, (2024), Brain Communications, 6

Projecting health and economic impacts of Lassa vaccination campaigns in West Africa

Smith DRM. et al, (2024)

Modeling the relative influence of socio-demographic variables on post-acute COVID-19 quality of life

Menkir TF. et al, (2024)

Clinical and epidemiological characteristics of Madariaga and Venezuelan equine encephalitis virus infections.

Rivera LF. et al, (2024), medRxiv

Cognition and Memory after Covid-19 in a Large Community Sample.

Hampshire A. et al, (2024), The New England journal of medicine, 390, 806 - 818

Correction: Tracking the incidence and risk factors for SARS-CoV-2 infection using historical maternal booking serum samples.

Mullins E. et al, (2024), PloS one, 19

Long-term neurological symptoms after acute COVID-19 illness requiring hospitalization in adult patients: insights from the ISARIC-COVID-19 follow-up study.

Battaglini D. et al, (2024), Journal of neurology, 271, 79 - 86

Implementation of Recommendations on the Use of Corticosteroids in Severe COVID-19.

Camirand-Lemyre F. et al, (2023), JAMA network open, 6

Leaping through Tree Space: Continuous Phylogenetic Inference for Rooted and Unrooted Trees.

Penn MJ. et al, (2023), Genome biology and evolution, 15

Public awareness of and opinions on the use of mathematical transmission modelling to inform public health policy in the United Kingdom

McCabe R. and Donnelly CA., (2023), Journal of The Royal Society Interface, 20

Real-time RT-PCR for Venezuelan equine encephalitis complex, Madariaga, and Eastern equine encephalitis viruses: application in human and mosquito public health surveillance in Panama.

Carrera J-P. et al, (2023), Journal of clinical microbiology, 61

Natural immune boosting can cause synchrony in susceptibility and outbreaks of respiratory infections with rapidly waning immunity

Pritchard MG. et al, (2023)

Modelling hepatitis C infection acquired from blood transfusions in the UK between 1970 and 1991 for the Infected Blood Inquiry

Hayes S. et al, (2023)

The burden and dynamics of hospital-acquired SARS-CoV-2 in England

Cooper BS. et al, (2023), Nature, 623, 132 - 138

A multi-country analysis of COVID-19 hospitalizations by vaccination status.

Gonçalves BP. et al, (2023), Med (New York, N.Y.), 4, 797 - 812.e2

A simulation-based method to inform serosurvey design for estimating the force of infection using existing blood samples.

Vicco A. et al, (2023), PLoS computational biology, 19

Design and Implementation of a National Program to Monitor the Prevalence of SARS-CoV-2 IgG Antibodies in England Using Self-Testing: The REACT-2 Study.

Ward H. et al, (2023), American journal of public health, 113, 1201 - 1209

Lessons for cross-species viral transmission surveillance from highly pathogenic avian influenza Korean cat shelter outbreaks

Kim Y. et al, (2023), Nature Communications, 14

Inferring community transmission of SARS-CoV-2 in the United Kingdom using the ONS COVID-19 Infection Survey

McCabe R. et al, (2023)

Long-term health impacts of COVID-19 among 242,712 adults in England

Atchison CJ. et al, (2023), Nature Communications, 14

Effectiveness of social distancing measures and lockdowns for reducing transmission of COVID-19 in non-healthcare, community-based settings.

Murphy C. et al, (2023), Philosophical transactions. Series A, Mathematical, physical, and engineering sciences, 381

Major adverse cardiovascular events (MACE) in patients with severe COVID-19 registered in the ISARIC WHO clinical characterization protocol: A prospective, multinational, observational study.

Reyes LF. et al, (2023), Journal of critical care, 77

Validation of extracorporeal membrane oxygenation mortality prediction and severity of illness scores in an international COVID-19 cohort.

Shah N. et al, (2023), Artificial organs, 47, 1490 - 1502

Madariaga and Venezuelan equine encephalitis virus seroprevalence in rodent enzootic hosts in Eastern and Western Panama.

Carrera J-P. et al, (2023), bioRxiv

Strategic use of SARS-CoV-2 wastewater concentration data could enhance, but not replace, high-resolution community prevalence survey programmes

Mills C. et al, (2023)

Improving estimates of epidemiological quantities by combining reported cases with wastewater data: a statistical framework with applications to COVID-19 in Aotearoa New Zealand

Watson LM. et al, (2023)

SARS-CoV-2 rapid antibody test results and subsequent risk of hospitalisation and death in 361,801 people

Whitaker M. et al, (2023), Nature Communications, 14

Public awareness of and opinions on the use of mathematical transmission modelling to inform public health policy in the United Kingdom

McCabe R. and Donnelly CA., (2023)

Characteristics and predictors of persistent symptoms post-COVID-19 in children and young people: a large community cross-sectional study in England.

Atchison CJ. et al, (2023), Archives of disease in childhood, 108

Thrombotic and hemorrhagic complications of COVID-19 in adults hospitalized in high-income countries compared with those in adults hospitalized in low- and middle-income countries in an international registry.

Griffee MJ. et al, (2023), Research and practice in thrombosis and haemostasis, 7

Intrinsic randomness in epidemic modelling beyond statistical uncertainty

Penn MJ. et al, (2023), Communications Physics, 6

Alternative epidemic indicators for COVID-19 in three settings with incomplete death registration systems

McCabe R. et al, (2023), Science Advances, 9

Optimality of Maximal-Effort Vaccination.

Penn MJ. and Donnelly CA., (2023), Bulletin of mathematical biology, 85

Association of Country Income Level With the Characteristics and Outcomes of Critically Ill Patients Hospitalized With Acute Kidney Injury and COVID-19.

Wainstein M. et al, (2023), Kidney international reports

Design and Implementation of a National SARS-CoV-2 Monitoring Program in England: REACT-1 Study.

Elliott P. et al, (2023), American journal of public health, 113, 545 - 554

Dynamics of SARS-CoV-2 infection hospitalisation and infection fatality ratios over 23 months in England.

Eales O. et al, (2023), PLoS biology, 21

Sir David Cox—A Life Well Lived

Donnelly CA., (2023), Issue 5.2, Spring 2023, 5

LONG-TERM PHYSICAL AND MENTAL HEALTH IMPACT OF COVID-19 ON ADULTS IN ENGLAND: FOLLOW UP OF A LARGE RANDOM COMMUNITY SAMPLE

Atchison CJ. et al, (2023)

Characteristics and outcomes of an international cohort of 600 000 hospitalized patients with COVID-19

Kartsonaki C. et al, (2023), International Journal of Epidemiology, 52, 355 - 376

Drivers of SARS-CoV-2 testing behaviour: a modelling study using nationwide testing data in England

Kim Y. et al, (2023), Nature Communications, 14

Neurological manifestations of COVID-19 in adults and children.

Cho S-M. et al, (2023), Brain : a journal of neurology, 146, 1648 - 1661

The use of representative community samples to assess SARS-CoV-2 lineage competition: Alpha outcompetes Beta and wild-type in England from January to March 2021.

Eales O. et al, (2023), Microbial genomics, 9

Validity of Self-testing at Home With Rapid Severe Acute Respiratory Syndrome Coronavirus 2 Antibody Detection by Lateral Flow Immunoassay.

Atchison CJ. et al, (2023), Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 76, 658 - 666

The uncertainty of infectious disease outbreaks is underestimated

Penn M. et al, (2023)

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Publications