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Drivers of epidemic dynamics in real time from daily digital COVID-19 measurements.

Journal article

Kendall M. et al, (2024), Science (New York, N.Y.)

Prevalence of persistent SARS-CoV-2 in a large community surveillance study.

Journal article

Ghafari M. et al, (2024), Nature

Digital measurement of SARS-CoV-2 transmission risk from 7 million contacts

Journal article

Ferretti L. et al, (2024), Nature, 626, 145 - 150

Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1

Journal article

Tsui JL-H. et al, (2023), Science, 381, 336 - 343

Frequency matters: comparison of drug resistance mutation detection by Sanger and next-generation sequencing in HIV-1

Journal article

Balakrishna S. et al, (2023), Journal of Antimicrobial Chemotherapy, 78, 656 - 664

How to avoid a local epidemic becoming a global pandemic.

Journal article

Stenseth NC. et al, (2023), Proceedings of the National Academy of Sciences of the United States of America, 120

Large-scale calibration and simulation of COVID-19 epidemiologic scenarios to support healthcare planning

Journal article

Groves-Kirkby N. et al, (2023), Epidemics, 42, 100662 - 100662

Epidemiological impacts of the NHS COVID-19 app in England and Wales throughout its first year

Journal article

Kendall M. et al, (2023), Nature Communications, 14

The mutational spectrum of SARS-CoV-2 genomic and antigenomic RNA

Journal article

Zhao L. et al, (2022), Proceedings of the Royal Society B: Biological Sciences, 289

Epidemiological dynamics of bacteriocin competition and antibiotic resistance

Journal article

Lehtinen S. et al, (2022), Proceedings of the Royal Society B: Biological Sciences, 289

Estimating SARS-CoV-2 variant fitness and the impact of interventions in England using statistical and geo-spatial agent-based models

Journal article

Hinch R. et al, (2022), Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 380

Statistical and agent-based modelling of the transmissibility of different SARS-CoV-2 variants in England and impact of different interventions

Journal article

Panovska-Griffiths J. et al, (2022), Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 380

Publisher Correction: SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway

Journal article

Willett BJ. et al, (2022), Nature Microbiology, 7, 1709 - 1709

EpiBeds: Data informed modelling of the COVID-19 hospital burden in England

Journal article

Overton CE. et al, (2022), PLOS Computational Biology, 18, e1010406 - e1010406

HIV drug resistance in a community‐randomized trial of universal testing and treatment: HPTN 071 (PopART)

Journal article

Fogel JM. et al, (2022), Journal of the International AIDS Society, 25

Human Immunodeficiency Virus (HIV) Genetic Diversity Informs Stage of HIV-1 Infection Among Patients Receiving Antiretroviral Therapy in Botswana

Journal article

Ragonnet-Cronin M. et al, (2022), The Journal of Infectious Diseases, 225, 1330 - 1338

Phylogenetic estimation of the viral fitness landscape of HIV-1 set-point viral load

Journal article

Zhao L. et al, (2022), Virus Evolution, 8

A highly virulent variant of HIV-1 circulating in the Netherlands

Journal article

Wymant C. et al, (2022), Science, 375, 540 - 545

A rapid, integrated method to monitor HIV viral load, drug resistance, and transmission patterns from finger-prick blood samples

Conference paper

Chaudron SE. et al, (2022), JOURNAL OF THE INTERNATIONAL AIDS SOCIETY, 25, 19 - 20

Many but small HIV-1 non-B transmission chains in the Netherlands

Journal article

Bezemer D. et al, (2022), AIDS, 36, 83 - 94

Publisher Correction: Monitoring key epidemiological parameters of SARS-CoV-2 transmission

Journal article

Kraemer MUG. et al, (2022), Nature Medicine, 28, 213 - 213

Exponential growth, high prevalence of SARS-CoV-2, and vaccine effectiveness associated with the Delta variant.

Journal article

Elliott P. et al, (2021), Science (New York, N.Y.), 374

Monitoring key epidemiological parameters of SARS-CoV-2 transmission

Journal article

Kraemer MUG. et al, (2021), Nature Medicine, 27, 1854 - 1855

The impact of viral mutations on recognition by SARS-CoV-2 specific T cells

Journal article

de Silva TI. et al, (2021), iScience, 24, 103353 - 103353

Efficacy of ChAdOx1 nCoV-19 (AZD1222) vaccine against SARS-CoV-2 lineages circulating in Brazil

Journal article

Clemens SAC. et al, (2021), Nature Communications, 12

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