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Deep clustering of bacterial tree images.

Journal article

Hayati M. et al, (2022), Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 377

Genomic population structures of microbial pathogens.

Journal article

Holt KE. et al, (2022), Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 377

Integrated chromosomal and plasmid sequence analyses reveal diverse modes of carbapenemase gene spread among Klebsiella pneumoniae.

Journal article

David S. et al, (2020), Proceedings of the National Academy of Sciences of the United States of America, 117, 25043 - 25054

Genomic epidemiology of the UK outbreak of the emerging human fungal pathogen Candida auris

Journal article

Rhodes J. et al, (2018), Emerging Microbes & Infections, 7, 1 - 12

Gene exchange drives the ecological success of a multi-host bacterial pathogen

Journal article

Richardson EJ. et al, (2018), Nature Ecology & Evolution, 2, 1468 - 1478

Phandango: an interactive viewer for bacterial population genomics

Journal article

Hadfield J. et al, (2018), Bioinformatics, 34, 292 - 293

Integrated view of Vibrio cholerae in the Americas

Journal article

Domman D. et al, (2017), Science, 358, 789 - 793

Species Mash-up

Journal article

Argimón S. and Aanensen DM., (2016), Nature Reviews Microbiology, 14, 730 - 730

Dense genomic sampling identifies highways of pneumococcal recombination

Journal article

Chewapreecha C. et al, (2014), Nature Genetics, 46, 305 - 309

Melioidosis Caused byBurkholderia pseudomalleiin Drinking Water, Thailand, 2012

Journal article

Limmathurotsakul D. et al, (2014), Emerging Infectious Diseases, 20, 265 - 268

Hierarchical and Spatially Explicit Clustering of DNA Sequences with BAPS Software

Journal article

Cheng L. et al, (2013), Molecular Biology and Evolution, 30, 1224 - 1228

A Single Multilocus Sequence Typing (MLST) Scheme for Seven Pathogenic Leptospira Species

Journal article

Boonsilp S. et al, (2013), PLoS Neglected Tropical Diseases, 7, e1954 - e1954

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