Artificial intelligence for modelling infectious disease epidemics
Kraemer MUG. et al, (2025), Nature, 638, 623 - 635
Canine Distemper Virus in Sardinia, Italy: Detection and Phylogenetic Analysis in Foxes.
Coradduzza E. et al, (2024), Animals : an open access journal from MDPI, 14
Drivers of epidemic dynamics in real time from daily digital COVID-19 measurements.
Kendall M. et al, (2024), Science (New York, N.Y.)
Estimating the contribution of setting-specific contacts to SARS-CoV-2 transmission using digital contact tracing data.
Wang Z. et al, (2024), Nature communications, 15
Comparing Phylogeographies to Reveal Incompatible Geographical Histories within Genomes.
Singer B. et al, (2024), Molecular biology and evolution
First Molecular Characterisation of Porcine Parvovirus 7 (PPV7) in Italy.
Dei Giudici S. et al, (2024), Viruses, 16
In vitro phenotypic characterisation of two genotype I African swine fever viruses with genomic deletion isolated from Sardinian wild boars.
Franzoni G. et al, (2024), Veterinary research, 55
Prevalence of persistent SARS-CoV-2 in a large community surveillance study.
Ghafari M. et al, (2024), Nature
Digital measurement of SARS-CoV-2 transmission risk from 7 million contacts
Ferretti L. et al, (2024), Nature, 626, 145 - 150
Parthenogenomics: Insights on mutation rates and nucleotide diversity in parthenogenetic Panagrolaimus nematodes.
Villegas LI. et al, (2024), Ecology and evolution, 14
A novel factor modulating X chromosome dosage compensation in Anopheles.
Krzywinska E. et al, (2023), Current biology : CB, 33, 4697 - 4703.e4
Allelic Entropy and Times until Loss or Fixation of Neutral Polymorphisms.
Ferretti L. and Ribeca P., (2023), Genes, 14
A General Framework for Neutrality Tests Based on the Site Frequency Spectrum.
Ramos-Onsins SE. et al, (2023), Genes, 14
Enhancing global preparedness during an ongoing pandemic from partial and noisy data.
Klamser PP. et al, (2023), PNAS nexus, 2
Interpreting the pervasive observation of U-shaped Site Frequency Spectra.
Freund F. et al, (2023), PLoS genetics, 19
Epidemiological impacts of the NHS COVID-19 app in England and Wales throughout its first year
Kendall M. et al, (2023), Nature Communications, 14
Origin, Genetic Variation and Molecular Epidemiology of SARS-CoV-2 Strains Circulating in Sardinia (Italy) during the First and Second COVID-19 Epidemic Waves.
Rocchigiani AM. et al, (2023), Viruses, 15
The mutational spectrum of SARS-CoV-2 genomic and antigenomic RNA
Zhao L. et al, (2022), Proceedings of the Royal Society B: Biological Sciences, 289
A Naturally Occurring Microhomology-Mediated Deletion of Three Genes in African Swine Fever Virus Isolated from Two Sardinian Wild Boars.
Fiori MS. et al, (2022), Viruses, 14
Estimating SARS-CoV-2 variant fitness and the impact of interventions in England using statistical and geo-spatial agent-based models
Hinch R. et al, (2022), Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 380
Statistical and agent-based modelling of the transmissibility of different SARS-CoV-2 variants in England and impact of different interventions
Panovska-Griffiths J. et al, (2022), Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 380
The bounded coalescent model: Conditioning a genealogy on a minimum root date.
Carson J. et al, (2022), Journal of theoretical biology, 548
A framework for reconstructing SARS-CoV-2 transmission dynamics using excess mortality data.
Ghafari M. et al, (2022), Nature communications, 13
Phylogenetic estimation of the viral fitness landscape of HIV-1 set-point viral load
Zhao L. et al, (2022), Virus Evolution, 8
Establishment and a comparative transcriptomic analysis of a male-specific cell line from the African malaria mosquito Anopheles gambiae.
Krzywinska E. et al, (2022), Scientific reports, 12
A highly virulent variant of HIV-1 circulating in the Netherlands
Wymant C. et al, (2022), Science, 375, 540 - 545
A Deeper Insight into Evolutionary Patterns and Phylogenetic History of ASFV Epidemics in Sardinia (Italy) through Extensive Genomic Sequencing.
Fiori MS. et al, (2021), Viruses, 13
First Genomic Evidence of Dual African Swine Fever Virus Infection: Case Report from Recent and Historical Outbreaks in Sardinia.
Fiori MS. et al, (2021), Viruses, 13
Evolutionary and Ecological Drivers Shape the Emergence and Extinction of Foot-and-Mouth Disease Virus Lineages.
Di Nardo A. et al, (2021), Molecular biology and evolution, 38, 4346 - 4361
Lessons for preparedness and reasons for concern from the early COVID-19 epidemic in Iran.
Ghafari M. et al, (2021), Epidemics, 36
OpenABM-Covid19—An agent-based model for non-pharmaceutical interventions against COVID-19 including contact tracing
Hinch R. et al, (2021), PLOS Computational Biology, 17, e1009146 - e1009146
femaleless Controls Sex Determination and Dosage Compensation Pathways in Females of Anopheles Mosquitoes.
Krzywinska E. et al, (2021), Current biology : CB, 31, 1084 - 1091.e4
Time to evaluate COVID-19 contact-tracing apps
Colizza V. et al, (2021), Nature Medicine, 27, 361 - 362
Epidemiological changes on the Isle of Wight after the launch of the NHS Test and Trace programme: a preliminary analysis
Kendall M. et al, (2020), The Lancet Digital Health, 2, e658 - e666
Genomic Diversity and Evolution of Quasispecies in Newcastle Disease Virus Infections.
Jadhav A. et al, (2020), Viruses, 12
Correction: Pervasive within-host recombination and epistasis as major determinants of the molecular evolution of the foot-and-mouth disease virus capsid.
Ferretti L. et al, (2020), PLoS pathogens, 16
Conserved Patterns in Developmental Processes and Phases, Rather than Genes, Unite the Highly Divergent Bilateria.
Ferretti L. et al, (2020), Life (Basel, Switzerland), 10
Quantifying SARS-CoV-2 transmission suggests epidemic control with digital contact tracing
Ferretti L. et al, (2020), Science, 368
Quantifying SARS-CoV-2 transmission suggests epidemic control with digital contact tracing
Ferretti L. et al, (2020)