Genetically distinct within-host subpopulations of hepatitis C virus persist after Direct-Acting Antiviral treatment failure
Zhao L. et al, (2025), PLOS Pathogens, 21, e1012959 - e1012959
Determinants of SARS-CoV-2 within-host evolutionary rates in persistently infected individuals
Ghafari M. et al, (2024)
Revisiting the origins of the Sobemovirus genus: A case for ancient origins of plant viruses.
Ghafari M. et al, (2024), PLoS Pathog, 20
A quantitative evaluation of the impact of vaccine roll-out rate and coverage on reducing deaths: insights from the first 2 years of COVID-19 epidemic in Iran.
Ghafari M. et al, (2023), BMC medicine, 21
Lineage replacement and evolution captured by 3 years of the United Kingdom Coronavirus (COVID-19) Infection Survey
Lythgoe KA. et al, (2023), Proceedings of the Royal Society B: Biological Sciences, 290
Insights into SARS-CoV-2 in Angola during the COVID-19 peak: Molecular epidemiology and genome surveillance.
Francisco NM. et al, (2023), Influenza and other respiratory viruses, 17
The recency and geographical origins of the bat viruses ancestral to SARS-CoV and SARS-CoV-2
Pekar JE. et al, (2023)
Reconstructing the evolutionary history of human, simian, and prosimian immunodeficiency viruses
Ghafari M. et al, (2023)
Insights into SARS-CoV-2 in Angola during the COVID-19 Peak: Molecular Epidemiology and Genome Surveillance
FRANCISCO NM. et al, (2023)
Estimating SARS-CoV-2 variant fitness and the impact of interventions in England using statistical and geo-spatial agent-based models
Hinch R. et al, (2022), Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 380
A framework for reconstructing SARS-CoV-2 transmission dynamics using excess mortality data.
Ghafari M. et al, (2022), Nature communications, 13
Purifying Selection Determines the Short-Term Time Dependency of Evolutionary Rates in SARS-CoV-2 and pH1N1 Influenza
Ghafari M. et al, (2022), Molecular Biology and Evolution, 39
Investigating the evolutionary origins of the first three SARS-CoV-2 variants of concern
Ghafari M. et al, (2022)
Investigating the evolutionary origins of the first three SARS-CoV-2 variants of concern
Ghafari M. et al, (2022), FRONTIERS IN VIROLOGY, 2
A mechanistic evolutionary model explains the time-dependent pattern of substitution rates in viruses.
Ghafari M. et al, (2021), Current biology : CB, 31, 4689 - 4696.e5
Lessons for preparedness and reasons for concern from the early COVID-19 epidemic in Iran.
Ghafari M. et al, (2021), Epidemics, 36
Excess deaths associated with the Iranian COVID-19 epidemic: A province-level analysis.
Ghafari M. et al, (2021), International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases, 107, 101 - 115
Estimates of anti-SARS-CoV-2 antibody seroprevalence in Iran.
Ghafari M. et al, (2021), The Lancet. Infectious diseases, 21, 602 - 603
A framework for reconstructing SARS-CoV-2 transmission dynamics using excess mortality data
Ghafari M. et al, (2021)
Engaging Religious Institutions and Faith-Based Communities in Public Health Initiatives: A Case Study of the Romanian Orthodox Church During the COVID-19 Pandemic.
Dascalu S. et al, (2021), Frontiers in public health, 9
Prisoner of War dynamics explains the time-dependent pattern of substitution rates in viruses
Ghafari M. et al, (2021)
Estimating the false-negative test probability of SARS-CoV-2 by RT-PCR
Wikramaratna PS. et al, (2020), Eurosurveillance, 25
Inferring Transmission Bottleneck Size from Viral Sequence Data Using a Novel Haplotype Reconstruction Method.
Ghafari M. et al, (2020), Journal of virology, 94, e00014 - e00020
Excess deaths associated with the Iranian COVID-19 epidemic: a province-level analysis
Ghafari M. et al, (2020)
The expected time to cross extended fitness plateaus.
Ghafari M. and Weissman DB., (2019), Theoretical population biology, 129, 54 - 67
Luria–Delbrück, revisited: the classic experiment does not rule out Lamarckian evolution
Holmes CM. et al, (2017), Physical Biology, 14, 055004 - 055004
On the role of topology in regulating transcriptional cascades
Ghafari M. and Mashaghi A., (2017), Physical Chemistry Chemical Physics, 19, 25168 - 25179
Observation of a crossover in kinetic aggregation of Palladium colloids
Ghafari M. et al, (2015), APPLIED SURFACE SCIENCE, 353, 1143 - 1149